rs47593086 SNP Detail

Summary

• ID
  rs47593086
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:17101794 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGAGA CCAACATCAG GAAACCTAGA
  Y
  ACCAGATGAC TGTGTTGCAT ATTCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss146100364	ENSMUSSNP2218042	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss325726629	CHEV_19_17198920	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs47593086					SNP	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:17101794 () rs orientation: forward

Symbol	Name	Function Class
Prune2	prune homolog 2	within coordinates
Tssr155419	transcription start site region 155419	1188 bp upstream
Tssr158489	transcription start site region 158489	998 bp downstream
Tssr158490	transcription start site region 158490	1091 bp downstream
Tssr158491	transcription start site region 158491	1154 bp downstream