rs47593717 SNP Detail

Summary

• ID
  rs47593717
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:54946899 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCCAGTTAC CCACTCGGGT
  CAACCACTAG TCAGCATGAA CATCTCACAA ATTCATGCCA CTTCACGAGA TGGCCACATG
  CTTTCCCTGC CACGGTGCAC CATAGCCCCT CAGACCACAC TCAAACATGT TAAAAGTCAG
  AAACCCTCCC ATGCCAGACT CCAAATCCTA CTCTTGCCAG ATAGACCAAA AAGCTGTCAC
  R
  CCTGACACGG CTCCCAGACT TTCCTCTGTC TATTCACTGT TCCTAAAACA GTTGCACATA
  GAAATGTGGT ATCTTTTTAA AGTTACTTTA GTGCCAAGTG TGGTGGTGCA CACTCACAAT
  CACAATGAAA GCAGAGATCA TGACTTCAAG ATGACTGTGA GCTGCACAGC ACACCCAGAT
  CAAACTGAAC CCACAAGACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ
ss60735296	NES16377556	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ
rs47593717					SNP	A	A	A	A	A	A	G	A	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60735296	NES16377556	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:54946899 () rs orientation: forward

Symbol	Name	Function Class
Ankrd44	ankyrin repeat domain 44	within coordinates
Rr1418	regulatory region 1418	within coordinates
Rr411098	regulatory region 411098	1782 bp distal
Rr411099	regulatory region 411099	within coordinates
Rr411100	regulatory region 411100	1211 bp proximal
Tssr11696	transcription start site region 11696	565 bp upstream