rs47593996 SNP Detail

Summary

• ID
  rs47593996
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:38525443 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGAAAGCAT AAAGAACATA
  CAGCAGGTAA AAAGACACAC AAGCATCAGA AGCTCATCTC TGAGTGAATA GAGCCCAACC
  TCTCCAGGTA TGCAGTGACA GCCAGAGACT CGCTGGACCT GCAGAGAGCA AAGCTAGTTT
  CACGAAGCCA GGAACTGAAT GTAAACCCCT CTGTTTCAAT GCTGAACAGA GAAAACATGA
  Y
  ACCAACTTGG GGTAGTGACT TTAACTTTCA AATTGCTACT CTCATTCGAA CACTGAGGAT
  TAAGATGGCA AGACCTGGGG AGCCAGCAAA CAGAATGGAG AGTCTGGGGA TCCAAACAGA
  AGATGGGTAT AAAGGTTATG CAGGATGGCC AGAGAGTGGC CATTTGAGAC CAGACCTAGT
  ACTGATGTCT AAAGAGAAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60390351	NES15883882	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47593996					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60390351	NES15883882	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:38525443 () rs orientation: forward

Symbol	Name	Function Class
Ankrd50	ankyrin repeat domain 50	Intron
Rr575672	regulatory region 575672	275 bp proximal