rs47594893 SNP Detail

Summary

• ID
  rs47594893
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:83107042 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AACTTCCCAA GTGAGTCCCA AGTGAGGGTT TACATATTAG
  CTCTAAGACT AACTCACAGA GAGGAGAACT CTAACTTAGC ATTTGATATC AGCAGCCCAC
  Y
  CCAAGACTTC ATCTCTAGTC CACATAAGGA AGAGTGAATG CCAGGGAGGA GAGGAAAAGG
  CAAAAACTGG AGGTACAATT CAACAACATC CCTCCTAGA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss145303894	ENSMUSSNP3970993	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss322735878	CHEV_8_84904312	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs47594893					SNP	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:83107042 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Il15	interleukin 15			Intron
				Noncoding-Transcript-Variant
Tssr81957	transcription start site region 81957			1348 bp upstream
Tssr81958	transcription start site region 81958			1332 bp upstream
Tssr81959	transcription start site region 81959			317 bp upstream
Tssr81960	transcription start site region 81960			130 bp upstream
Tssr81961	transcription start site region 81961			92 bp upstream