rs47595023 SNP Detail

Summary

• ID
  rs47595023
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:91053048 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCCAGCTCT ACTATTCTAG
  TTTCAAAGCG CCCAGAGTGT TTATTGCTGG AAAGTCCAGC AATAGGTAGC AGGTCCCTTG
  TGGAGGCTAG AGATGGTTTC GTTTGGAGAG TAAACCAAGG TCCAGGATGA AGTCAAAAGA
  AGGGGGCTCT GCAACCCGCC TTTAAGATAC CCACTAACAG CAACCATTTT CTCATCACAG
  M
  GGCAAGGCTA ACTGACCTGG AAAGGAGGAG CCTGGGCTGC TGTCCCTCAA CGGAAGAACC
  AAAGAGAAAG AAAAAAACAA ACAGCACCCG GGAAGCCTGG ATCGTACCTG ATGTGCCTCG
  CTGTCTGAGA GTTCACTTAT TTATTTATCT ATGTATTTAT TTATTTATTA ATTCCATTGC
  CCAGATGTTG TTATGTTTAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61198254	NES16702738	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47595023					SNP	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61198254	NES16702738	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:91053048 () rs orientation: forward

Symbol	Name	Function Class
Cxcl2	C-X-C motif chemokine ligand 2	within coordinates
Gm73232	predicted gene, 73232	1985 bp upstream
Rr614420	regulatory region 614420	1996 bp distal
Rr614422	regulatory region 614422	1306 bp distal
Tssr47224	transcription start site region 47224	1480 bp downstream
Tssr47225	transcription start site region 47225	1378 bp downstream
Tssr47226	transcription start site region 47226	1309 bp downstream
Tssr47227	transcription start site region 47227	1115 bp downstream
Tssr47228	transcription start site region 47228	1052 bp downstream
Tssr47229	transcription start site region 47229	1031 bp downstream
Tssr47230	transcription start site region 47230	1006 bp downstream
Tssr47231	transcription start site region 47231	976 bp downstream
Tssr47232	transcription start site region 47232	829 bp downstream
Tssr47233	transcription start site region 47233	779 bp downstream
Tssr47234	transcription start site region 47234	744 bp downstream
Tssr47235	transcription start site region 47235	within coordinates
Tssr47236	transcription start site region 47236	19 bp upstream
Tssr47237	transcription start site region 47237	68 bp upstream
Tssr47238	transcription start site region 47238	74 bp upstream
Tssr47239	transcription start site region 47239	134 bp upstream
Tssr47240	transcription start site region 47240	146 bp upstream
Tssr47241	transcription start site region 47241	161 bp upstream
Tssr47242	transcription start site region 47242	198 bp upstream
Tssr47243	transcription start site region 47243	221 bp upstream
Tssr47244	transcription start site region 47244	255 bp upstream
Tssr47245	transcription start site region 47245	275 bp upstream
Tssr47246	transcription start site region 47246	326 bp upstream
Tssr47247	transcription start site region 47247	370 bp upstream
Tssr47248	transcription start site region 47248	433 bp upstream
Tssr47249	transcription start site region 47249	503 bp upstream
Tssr47250	transcription start site region 47250	641 bp upstream
Tssr47251	transcription start site region 47251	705 bp upstream
Tssr47252	transcription start site region 47252	757 bp upstream
Tssr51811	transcription start site region 51811	1992 bp upstream
Tssr51812	transcription start site region 51812	962 bp upstream
Tssr51813	transcription start site region 51813	945 bp upstream
Tssr51814	transcription start site region 51814	18 bp downstream
Tssr51815	transcription start site region 51815	52 bp downstream
Tssr51816	transcription start site region 51816	86 bp downstream