rs47596079 SNP Detail

Summary

• ID
  rs47596079
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:56325290 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGAGGCTT CCCGAACCCT
  GCAGGAACAG AAAACCCTGA GTACCCATAT CCCCTCTTCT ACTCTGCTGC TCCAGTACCT
  GGGCTGGCCC TAACCAAAGT CCCCCACTTC AAGTACCCAA ACACTGCCAA TCACCTCTGC
  CCTCAAAGCC ACCCCTGGGC AGTGATGCCC CTGGCCACTC AAGAAACTGC AGCCTGACAC
  M
  GAAAGGCAGA GGATGCAGAC CTGAGCTGCT GGCCCAGCCA ACTCCCTTGT CTCCTCACCT
  TCTAGCTCAG GCTACCACTG CCATTTCCCA TAGTGCCCTG CTCCCTCCTG GGCCCCCACT
  GCTACACACA CACACAGCTC CGGGGATCCT TTAGACACAG CCTAGTACCA GCTTGCCACA
  GCCTGTACAT GGCCAGGCAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62801300	NES17365485	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	A	C	C	C	A	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47596079					SNP	C	C	C	C	A	C	C	C	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62801300	NES17365485	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:56325290 () rs orientation: forward

Symbol	Name	Function Class
Mpnd	MPN domain containing	1500 bp downstream
Rr332115	regulatory region 332115	within coordinates
Sh3gl1	SH3-domain GRB2-like 1	within coordinates
Tssr148733	transcription start site region 148733	832 bp upstream