rs47597680 SNP Detail

Summary

• ID
  rs47597680
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:72689165 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTATCCTACA CCAGCGCTCC
  CTGATCGAAA GAAAATTCTG GTAGGAAGAG AGACTGCACA CTCCCCATAC GGAAAGGAAG
  TATGAGAAAT AAGACAAGCC TCCATTTTTG TATTTTAAGG GCACAGAGCA GAAGCATCAT
  TCTCAAGGCT GTGCCCACGA CCACAGCACT TTGTAGAGCA GGAGACAGTG AGCGCTTGGC
  Y
  GTTCCAGGTG TTGGCCTGAG TTCGTTTCCT TCCACTGACA ATGCACCACC CCTGGGCTCC
  TGATGAGGGA ACTGGAGTTG GGGTGTGTGG CTGGCCACAG ATTGTCTCCA CTTGGTCCTT
  ATACTTTCAC ATCCAAGCTC TCAATCTCCA TGCATTCAAT GTTACCATGT GCTATGATGC
  ATTTAAATCT AATGGGGGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61421304	NES16805483	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47597680					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61421304	NES16805483	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:72689165 () rs orientation: forward

Symbol	Name	Function Class
Gm68819	predicted gene, 68819	493 bp downstream
Rr197252	regulatory region 197252	1765 bp distal