rs47598862 SNP Detail

Summary

• ID
  rs47598862
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127691655 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATGGCTCAG CGGTTAACAG
  TACTGACTGT TCTTTCAGAG ATCCTGAGTC CTATCCCCAG CAATCAGATG GTGGCTCACC
  ACCATGTGCA ATGGAATCCA ATGCCCTGTC CTGGTATGCA GGTATACATG CAATAGAGCA
  CTCAGATACA TAAAATAAAT AAACCTTAAA AAAAGAAAAG ACTAGTACCC AAAATGTCTT
  Y
  AGGCCCAGCC AAGGAATTAA ATAGGCAGGG ACTTACAGGC TTATTTTAAA AAGTGGTTTT
  GTTTTGTTTG GGCTAGGCAG AAGCTTGTCC CTTTTGCTCA CACCTAACAC ACACACTCTC
  TCTCTCTCTG TGTACTCAGT GTCTCACAAA AACACCCTTT CTTATACCCA GTCTGTTACA
  CTTTGTAATG TAACCTAGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss135874547	ENSMUSSNP7235782	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss320958016	CHEV_3_127600924	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs47598862					SNP	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127691655 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13803	CpG island 13803	1483 bp distal
Fam241a	family with sequence similarity 241, member A	1683 bp upstream
Rr398009	regulatory region 398009	1433 bp downstream
Rr584896	regulatory region 584896	1987 bp distal
Rr584897	regulatory region 584897	1192 bp distal
Tssr35608	transcription start site region 35608	1773 bp upstream
Tssr35609	transcription start site region 35609	1736 bp upstream
Tssr35610	transcription start site region 35610	1669 bp upstream