rs47599167 SNP Detail

Summary

• ID
  rs47599167
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:122967373 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GTGTGACAT GACAACCTGT TGCTGCAATT
  GGTTCTCACA TACTACAGAG CCTTAGAGAG AGAATGAGTT GTGCTTTCTG AGGGAGGCAG
  GTCTTTTCTT GAAATGGCTT CAGAAATCAC TTATGCAGAA GTGAGGATCA CGAATGAATC
  Y
  GACTCCTTGG ACACCTACTC AAAATGTCCT GCAGGTAAAA CAAAACAAAA GGAAACAAAA
  CCACCTTTCT GTACTTATGT AGACTGGAGG ATAAAGGAAT GGCCACTAGC AAAGTTAGGT
  GGTATTTGTG AATGATTCTT TGAGCGCTCC                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss60937742	NES16191468	PERLEGEN	MM_PANEL2	f	SNP	C	C		C	C	T		C
ss321934840	CHEV_6_122940432	CHEVERUD	SCREENING_POP	f	SNP			C				T
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs47599167					SNP	C	C	C	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60937742	NES16191468	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:122967373 () rs orientation: forward

Symbol	Name	Function Class
Clec4a4	C-type lectin domain family 4, member a4	within coordinates
D6Mit300	DNA segment, Chr 6, Massachusetts Institute of Technology 300	939 bp proximal
Tssr58744	transcription start site region 58744	106 bp downstream
Tssr58745	transcription start site region 58745	49 bp downstream