rs47600530 SNP Detail

Summary

• ID
  rs47600530
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:118689782 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGTTCAAG ACCACAGGAA
  ATAATGAACA GAGAGCTATA GTCACCCATC GCATAAATGA CCACATACCC CACTTCTGCC
  AATTAAGGGG TGTGTGTGCA GCTGCATCTA AATCTGCAGG TAGAGCTAAA GAGACTAAAA
  TGTTCTAGTC TTCAATATTT TTGTGGTGTC TCCATTGAAA AGATAGCCTC AGACATTGGT
  R
  GCTAGCAAAC CTCTCTTCTT CCCAGTCTTC TCCCCTCTGT TTTTACAAAG CCTCTTTGGT
  ATCATTCATT TCATTTTCTT CAGCATCAGC TGGGGATAAT TATAGCTCAG AGGAGTGCGT
  AAGGATGAAG GATGCTCCTG TGACACTGTG GGATCTGCAG GGAGCTTTCT CCCCTTTGTG
  GGGAGAGCTG CTCCTACATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	LG/J	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61322044	NES16929492	PERLEGEN	MM_PANEL2	f	SNP	A		G	A		G
ss323503912	CHEV_10_118290933	CHEVERUD	SCREENING_POP	f	SNP		A			G
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	LG/J	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs47600530					SNP	A	A	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61322044	NES16929492	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:118689782 () rs orientation: forward

Symbol	Name	Function Class
Dyrk2	dual-specificity tyrosine phosphorylation regulated kinase 2	1726 bp downstream
Gm67702	predicted gene, 67702	within coordinates
Rr226050	regulatory region 226050	982 bp distal
Rr226051	regulatory region 226051	within coordinates
Tssr99504	transcription start site region 99504	1987 bp downstream