rs47600620 SNP Detail

Summary

• ID
  rs47600620
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:129915527 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCGAGGTT CACTCCCAGT
  ATGAGCACAA TTTTAGTTTT CTACGATTTT ATTACCCCAA GGAGGGACCT CAGAATCTGG
  ACTGGGGGGA GGGGTGTCAA CAATTTCCTA TTTGTTTTTT AGGTCGGCCG GCAAGGTAGC
  TCAATAGATC GTTTACCACA AAATGGTAGA CATCTTGGAC CCAAGTGATG GAAAGACATA
  R
  CTTTAAATTT TCGGCCCTCT ACACACAGCC CGCAATTTTC TTTGTTTCTT TTTCCTTAAA
  AAAATAAATA AATAAAAGAA AAGAAAATCT TTAAAGCCGG CAATCCCAGC CCTAAGGAAG
  CGGAGTCAGG AAAATCAAGG AAGGCCAAGC GAGGCCATAA AGTTCAAGGC TAACCTGAGA
  CTCAAAAACG CAGTGAGTAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss144477344	ENSMUSSNP1097847	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
ss321692405	CHEV_5_130362556	CHEVERUD	SCREENING_POP	f	SNP			A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs47600620					SNP	A	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:129915527 () rs orientation: forward

Symbol	Name	Function Class
Chchd2	coiled-coil-helix-coiled-coil-helix domain containing 2	within coordinates
Cpgi16684	CpG island 16684	281 bp proximal
Rr399383	regulatory region 399383	522 bp upstream
Rr621372	regulatory region 621372	within coordinates
Rr621373	regulatory region 621373	774 bp proximal
Tssr53498	transcription start site region 53498	453 bp downstream
Tssr53499	transcription start site region 53499	602 bp downstream
Tssr53500	transcription start site region 53500	730 bp downstream
Tssr53501	transcription start site region 53501	756 bp downstream