rs47601357 SNP Detail

Summary

• ID
  rs47601357
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:113393428 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGGA GACGGTGACC GTGGTCCCTG
  Y
  GCCCCAGACA TCGAAGTACC AGTAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss138742388	ENSMUSSNP3860956	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss324175496	CHEV_12_114668019	CHEVERUD	SCREENING_POP	f	SNP		C	T
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs47601357					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:113393428 () rs orientation: forward

Symbol	Name	Function Class
Igh	immunoglobulin heavy chain complex	within coordinates
Ighd4-1	immunoglobulin heavy diversity 4-1	720 bp downstream
Ighg	Immunoglobulin heavy chain (gamma polypeptide)	within coordinates
Ighj1	immunoglobulin heavy joining 1	within coordinates
Ighj2	immunoglobulin heavy joining 2	293 bp upstream
Ighj3	immunoglobulin heavy joining 3	676 bp upstream
Ighj4	immunoglobulin heavy joining 4	1241 bp upstream
Rr554	regulatory region 554	1836 bp distal
Rr473804	regulatory region 473804	1951 bp distal
Tssr115504	transcription start site region 115504	419 bp upstream
Tssr118005	transcription start site region 118005	1261 bp upstream
Tssr118006	transcription start site region 118006	1230 bp upstream
Tssr118007	transcription start site region 118007	1184 bp upstream
Tssr118008	transcription start site region 118008	1157 bp upstream
Tssr118009	transcription start site region 118009	1146 bp upstream
Tssr118010	transcription start site region 118010	1008 bp upstream
Tssr118011	transcription start site region 118011	910 bp upstream
Tssr118012	transcription start site region 118012	675 bp upstream
Tssr118013	transcription start site region 118013	660 bp upstream
Tssr118014	transcription start site region 118014	556 bp upstream
Tssr118015	transcription start site region 118015	460 bp upstream
Tssr118016	transcription start site region 118016	306 bp upstream
Tssr118017	transcription start site region 118017	12 bp downstream
Tssr118018	transcription start site region 118018	568 bp downstream
Tssr118019	transcription start site region 118019	585 bp downstream
Tssr118020	transcription start site region 118020	641 bp downstream
Tssr118021	transcription start site region 118021	781 bp downstream
Tssr118022	transcription start site region 118022	813 bp downstream
Tssr118023	transcription start site region 118023	978 bp downstream