rs47601424 SNP Detail

Summary

• ID
  rs47601424
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:115981359 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTATGTAT ATGTATACAC
  ACTACACACA CACACTACAC ACACACACTA CACACACACA CTACACACAC ACACACACAC
  ACCACACACA CCACACACAC ACATACACAC ACACACATGA AGAGGCTTTA CCTGTTTAAA
  ACTTTACTTA CTAGATAGTA ACTTACTAAA TAGTAAGCTC CGAGACAGAT GTGGGTTTTT
  W
  GTGCCTTATA CCAAAATACT TTCAAAATAC AACTTCCAAA ATCTTCAATT TATTGATAAG
  TGACCATCAC TAACCACTCA GCTGATAACG TAATCTGAAT TGCATTGTAC AAAATTAACC
  ATTTCTATAC TTAGCTGCAG TCAGGGAGAA TAAGCTATAT TCGGCCTTTT TGTTTTCCTG
  CTCCATGCAT TTACTTCTAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61318501	NES16935499	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	T	A	A	T	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47601424					SNP	A	A	A	T	A	A	T	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61318501	NES16935499	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:115981359 () rs orientation: forward

Symbol	Name	Function Class
Ptprr	protein tyrosine phosphatase receptor type R	within coordinates
Rr439277	regulatory region 439277	1541 bp distal
Tssr95844	transcription start site region 95844	1552 bp downstream
Tssr95845	transcription start site region 95845	1532 bp downstream
Tssr95846	transcription start site region 95846	1502 bp downstream