rs47602420 SNP Detail

Summary

• ID
  rs47602420
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:125198621 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGGCAGGG CCGTGCTAGG
  CCGGGGGTCC ACTTCCCACG CAGCAGCCTT TCGTTCTGCA GAGCCATCGA TCCTTCCTTT
  CCCTTGGCCC ATTTTCCACC TTCCCTTCGT GCTGCCTCAG GGCAGGGCTG AAGAGCTGGA
  AGAAAGCAGT CAGTGTAGCC TCCCAATGTC CCCCGAAGGT CTCCACTCTG CTCTGGGCTT
  Y
  CCTTTGCCTA GTGCAGGGAG CCATCTCTGG AGAAGAAGCA ACACTGTCCT TGGTGTGTCC
  CAAGCCTGGA GCGTATGTTC CCTGTTGGCC CACCCAGCCC CAGCACGGGA ATTATTTCCT
  GGGTTTCTGT CCATCTAAGG CTTAGGTGTA GTTGGCATTC GTTCTTCTGG GGGTGTTAGT
  CCTTCTACTT TCTATCTCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60940120	NES16188573	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47602420					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60940120	NES16188573	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:125198621 () rs orientation: forward

Symbol	Name	Function Class
Rr133010	regulatory region 133010	1780 bp proximal
Rr147527	regulatory region 147527	within coordinates
Rr368188	regulatory region 368188	529 bp upstream
Tssr58933	transcription start site region 58933	66 bp upstream
Tssr58934	transcription start site region 58934	167 bp upstream
Tssr58935	transcription start site region 58935	231 bp upstream
Vamp1	vesicle-associated membrane protein 1	within coordinates