rs47602593 SNP Detail

Summary

• ID
  rs47602593
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:58884798 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGGTGTGT GTGCACGCAC
  GGGCCTATCT TTTCCTCCTT GAAAGTGAAT TCCTGTATTT ATATTTTAAA TTGTATAATT
  GTAACCATTC CAGCAGAACA AAAATATTCT GAAGACAGAT ATTTGTCTGT AAAAACATAT
  TCTCTTTGAC TGTCAAACTA GTAAAAAAAA AATAGCCAAG ACACAGAACT CCTCCAGAAA
  S
  CTCATTGTGA AGCTTGGTAC CTTCCTCGGC TCTGAAGAGG AAGCTTCCGC CCAAGTAGAA
  ATTTCGCACA GTTCTTAGTG TATGCCAGAC TATCTGGCAG AAAAGAATGG AGCCCAGATA
  ATGAAGGTCA GTAGTGAATG GCAGGATCCC ACCTTAACCA GGACTGCTGA GTCATGCACA
  CCACAAAACC CTAAAGTTTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61407225	NES16791465	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47602593					SNP	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61407225	NES16791465	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:58884798 () rs orientation: forward

Symbol	Name	Function Class
Gm47271	predicted gene, 47271	within coordinates
Neo1	neogenin	within coordinates
Rr383441	regulatory region 383441	612 bp upstream
Rr680057	regulatory region 680057	1599 bp proximal
Tssr89922	transcription start site region 89922	1620 bp downstream