rs47603557 SNP Detail

Summary

• ID
  rs47603557
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:94796977 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTTTCCTG TCGCTGGAGC
  TGCTATGTCT CCTCCCACCT GGGTCGCCAT GGAGACTCAG CGCCTTCCTT CTCCAGGCAA
  AATGGGCGAA GCTTAGTTAG CTCAGCCCTG ATTGTAGCAA GCCCACTTTC TCGGACATTG
  TCCTTCTCCA TTTTTATTTA TTTATTTATT TTTTACCAAA AGAAAGCTAG CCAGGGCATT
  R
  GTGCTTGAAC GGAAGTGCAT AGCACACGGT ACCTGAGAGC TCCCCAGGAC CCGGAGACTT
  TGGAGAAAGC AGTTGGGAGC ACACTGAAGC TATAATGAAT TGCAAACTCC CAGACACTGG
  AGGGTTCCCC CCTCTCAGTC CTCTCCTTTT GGGGGAAGTA GAGGTGAAGA AGGGGTTGTT
  TGGAAAATTC TGTTATTTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60512651	NES16528910	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47603557					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60512651	NES16528910	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:94796977 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8509	CpG island 8509	995 bp proximal
Kcnj6	potassium inwardly-rectifying channel, subfamily J, member 6	within coordinates
Rr520239	regulatory region 520239	57 bp distal
Rr520240	regulatory region 520240	295 bp distal
Rr520241	regulatory region 520241	600 bp proximal
Rr520242	regulatory region 520242	1527 bp proximal
Tssr142241	transcription start site region 142241	1153 bp upstream
Tssr142242	transcription start site region 142242	1052 bp upstream
Tssr142243	transcription start site region 142243	978 bp upstream
Tssr142244	transcription start site region 142244	965 bp upstream
Tssr142245	transcription start site region 142245	1256 bp downstream
Tssr142246	transcription start site region 142246	1352 bp downstream
Tssr142247	transcription start site region 142247	1458 bp downstream
Tssr142248	transcription start site region 142248	1489 bp downstream
Tssr142249	transcription start site region 142249	1535 bp downstream
Tssr142250	transcription start site region 142250	1588 bp downstream
Tssr142251	transcription start site region 142251	1620 bp downstream