rs47603690 SNP Detail

Summary

• ID
  rs47603690
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:135388812 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C AAGCTTCTTG AATAACAGAG CGCAGATGGT GAGGCAGGCC
  TTAGGAGCTG CTAGGGACAT CAGCGGGGGT AAAGTCCCTC CCTGTTTTGT GTGGTAGGTG
  G
  GTGGACCGGC TTAATGGGAG GACAACAGCC TCTGGGATCA GTCTTATGGC TTTTGGTTTA
  ACGTCACTAC ATAGGGCCAG CTCTTGTGGC ACAAAATGAC C                    
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss145534559	ENSMUSSNP1978401	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs47603690					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135388812 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nav1	neuron navigator 1			Intron
				Noncoding-Transcript-Variant
Rr419148	regulatory region 419148			349 bp distal
Rr419149	regulatory region 419149			37 bp proximal
Rr419150	regulatory region 419150			269 bp proximal
Rr419151	regulatory region 419151			1273 bp proximal