rs47603721 SNP Detail

Summary

• ID
  rs47603721
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:46386842 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTATTCTTTT TTGCATCCTG
  TTTCTTCAGT CAGCCTTCAG ACAAAACAGG TGTTATGAGA CAAGTCCTTG TGGTCTTTCT
  GAACCAAAAA TAGATTCAGA GGTGGCCACA TTCAGGCAGG CAGTCGTTGT ATTGTATGAT
  CCTGAAAAGT TCCTTGCCTT GGGGTATTGG CAAATGGTGG TCCTGAAGTG AGGGATGCCT
  Y
  TGCAGGTTAC ACACCCTTTA AAGCTGAATC TTTTTCCTAT GTGGCATCCT CTTATTGCCT
  CTGGAGATGG GAGATGGGCT GTAGAGAGCT GAGGTTACCC CCCCCCCCCG TGTGTCACTG
  GGATAATAAT GCAAAGGAAA CTGACAGCCA GGAGGGTCTG GGGACCAGCC TGTCCGGGTA
  GCCAGGAGCC ATGCTGGCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss60312983	NES15818152	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs47603721					SNP	T	T	T	T	T	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60312983	NES15818152	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:46386842 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11002	CpG island 11002	978 bp distal
Rr406001	regulatory region 406001	1476 bp downstream
Rr548730	regulatory region 548730	1367 bp distal
Rr548731	regulatory region 548731	1641 bp distal
Rr548732	regulatory region 548732	1533 bp distal
Rr548733	regulatory region 548733	821 bp distal
Rr548734	regulatory region 548734	779 bp distal
Rr548735	regulatory region 548735	1594 bp proximal
Sufu	SUFU negative regulator of hedgehog signaling	Intron
Tssr156753	transcription start site region 156753	1404 bp downstream
Tssr156754	transcription start site region 156754	1370 bp downstream