rs47604688 SNP Detail

Summary

• ID
  rs47604688
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:6885571 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                        GCGATGAGGA AACAACCAGA CTGAGGGTTG TTCTACAGCA
  GGGGCTGAAC CCTGCTCTTT GACCTGCAGT CGCAATCTCG ATGCTGTGAC CATGAGAGAG
  S
  GGCTCTGCTT CAGAGAGATC AGGAAAGGTG TAGACACTCC TACCCACGGG AGCCTCATAG
  GCAGGGGGGC TCAGTGAGGA GGACATACAT CATCTGGAAC                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60526304	NES16538805	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47604688					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60526304	NES16538805	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:6885571 () rs orientation: reverse

Symbol	Name	Function Class
Gm64560	predicted gene, 64560	within coordinates
Rr521400	regulatory region 521400	650 bp distal
Rr521401	regulatory region 521401	within coordinates
Tmem181c-ps	transmembrane protein 181C, pseudogene	within coordinates