rs47604732 SNP Detail

Summary

• ID
  rs47604732
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:122524957 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAGAAAATGG GGAGGGGCCA GAGAGCAGGG CTGAGTTTTA
  AAGTATGCTT TGGAGATGTT CTTTAGATGG GCTGTTGTTA ACAGTTGAAA GCTAAAAATA
  Y
  AGCAAAAATG ACCCGTTCTT TGTTTTACCC TCTCCGCTTT AAAGACAAAC TATGGATAGC
  TTACTGGAGG TTTTTGAGTG GTCCTAGGCT AGGGCACTG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss135748519	ENSMUSSNP6232761	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss320914176	CHEV_3_122434226	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs47604732					SNP	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:122524957 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13771	CpG island 13771	373 bp distal
Pde5a	phosphodiesterase 5A, cGMP-specific	within coordinates
Rr584394	regulatory region 584394	1728 bp distal
Rr584395	regulatory region 584395	within coordinates
Rr584396	regulatory region 584396	825 bp distal
Tssr31514	transcription start site region 31514	1573 bp downstream
Tssr31515	transcription start site region 31515	1439 bp downstream
Tssr31516	transcription start site region 31516	1414 bp downstream
Tssr31517	transcription start site region 31517	1379 bp downstream
Tssr31518	transcription start site region 31518	1251 bp downstream
Tssr31519	transcription start site region 31519	1189 bp downstream
Tssr31520	transcription start site region 31520	1155 bp downstream
Tssr31521	transcription start site region 31521	1069 bp downstream
Tssr31522	transcription start site region 31522	1047 bp downstream