rs47605748 SNP Detail

Summary

• ID
  rs47605748
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:24791389 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T TATGCTAAAA TGGGGAATAC ATGTTTCCTA GTTTTATAGC
  TGTTTTGATT TCCACATCCT GAATTTCATA CCAGAAAGGA ACTGCTGGGA TACATACTTA
  Y
  TGGAAAAAAA ATTTTTTTTT TTTCTAAAAG AACAAGCCCT TGGGAGGAGA AGGCGTTTGC
  TTAGTTCTGT CTGCTTTGCT GTGATGCCCC AGATGGTTTT C                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss146998865	ENSMUSSNP2819347	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs47605748					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:24791389 () rs orientation: forward

Symbol	Name	Function Class
Arg1	arginase, liver	mRNA-UTR
Tssr92746	transcription start site region 92746	129 bp upstream
Tssr92747	transcription start site region 92747	202 bp upstream
Tssr97085	transcription start site region 97085	1 bp downstream
Tssr97086	transcription start site region 97086	47 bp downstream
Tssr97087	transcription start site region 97087	81 bp downstream
Tssr97088	transcription start site region 97088	139 bp downstream
Tssr97089	transcription start site region 97089	158 bp downstream
Tssr97090	transcription start site region 97090	189 bp downstream
Tssr97091	transcription start site region 97091	580 bp downstream
Tssr97092	transcription start site region 97092	600 bp downstream
Tssr97093	transcription start site region 97093	624 bp downstream
Tssr97094	transcription start site region 97094	640 bp downstream
Tssr97095	transcription start site region 97095	654 bp downstream
Tssr97096	transcription start site region 97096	919 bp downstream
Tssr97097	transcription start site region 97097	1193 bp downstream
Tssr97098	transcription start site region 97098	1341 bp downstream