rs47605920 SNP Detail

Summary

• ID
  rs47605920
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:45319399 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGATTACTC TTCTGTCAGC
  TCCAGCTCCA AGGATTTAGA GCCATGATGA ACAGATAGCC AATAGTGCCC ATGGCCCTTA
  GACTAGGGCC ATTTTCCTCA TGGGGTGGAT TCAGACATGA CAGGTAAGGA GGGGGATAGC
  AGATGTAACT CTTCAACCCG GTAGAAAAGA ACCAAGGCTG CAAACATGAC ATACAGCAAT
  R
  CTTCTGGAGC CGCAGCGCCT GAGAAACTCT TATAAACTGT CTTGGAGAAC TGGTTTATGC
  TTTGAAGACA ATTCAAGTAG CCCTCTGGAT AGTTAACTTT CTCGGGAGTG GATATTTTTT
  CTTGTTGAAA CCAAAGACTC CCATTATTAC CTGCACATTT GGTCTGTTTC TTTTAGTTGC
  CCCTTCAAAT GCCAGGTAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss146251728	ENSMUSSNP1753512	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47605920					SNP	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:45319399 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14233	CpG island 14233	633 bp proximal
Exosc3	exosome component 3	within coordinates
Gm68922	predicted gene, 68922	960 bp upstream
Rr100958	regulatory region 100958	1 bp proximal
Tssr37060	transcription start site region 37060	974 bp upstream
Tssr37061	transcription start site region 37061	986 bp upstream
Tssr37062	transcription start site region 37062	1019 bp upstream
Tssr41531	transcription start site region 41531	871 bp downstream
Tssr41532	transcription start site region 41532	977 bp downstream
Tssr41533	transcription start site region 41533	1063 bp downstream
Tssr41534	transcription start site region 41534	1181 bp downstream