rs47605961 SNP Detail

Summary

• ID
  rs47605961
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:48769989 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGTCCCTTCC CTTCCCTTCC
  CTTCCCTTCC CTTCCCTTCC CTTCCCTTCC CTTCTTTCTT TCTTTCTTTT TTTTGTTTTG
  GTTTTTCGAG ATAGGATTTC TCTGTGTAGT CCTGGCTGTC CAGGAACTCA CTTTGTAGCC
  AGGCTGGCCT CGAACTCAGA AATCCACCTG CCTCTGCCTC CCAAGTGCTG GGATTAAAGG
  T
  GTGCGCCACC ACGCCCGGTC AGGCCTTTTT CTTAAAGCTT GAGCTGCTGG CGCTGTTTCT
  GGAATCCTCC GTGTGGCTGT GGACAGGCAC ATTTCTGGGG GTATTCTGCT GAAGGGAGGC
  TGAGGGGCCA TGCGTGTGCG CGCGTGTGTG TGCGTGTGTA GTAGTAGTAG TAGTAGTAGT
  AGTAGTAGTA GTAGTAGTAG                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss145717357	ENSMUSSNP6219248	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs47605961					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:48769989 () rs orientation: forward

Symbol	Name	Function Class
Rr370279	regulatory region 370279	627 bp downstream
Rr528303	regulatory region 528303	1265 bp distal
Tssr145120	transcription start site region 145120	552 bp downstream
Unc5cl	unc-5 family C-terminal like	within coordinates