rs47606754 SNP Detail

Summary

• ID
  rs47606754
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:46383028 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAGAAAGC AACCTCTATC
  CACCTACGAC ACAAAGAAAA GGACCTAGTG GCATGTCCAG GTCCCAGAGG GCCGGAACAT
  CACAGTGACT CTGAAAAGGT CAGCCTAGGT CAGAGGGAAC TGGTAGTTTG CCTCAGGGGA
  GGGACCCAGA AAGTAGGAAG ATTCTAACCA GTGTGGGAGG GACCAAACCT TTGAGTGAAA
  Y
  TCAGAAATTA AGACAAATGT CCCTCCTCAT AAAAGCAATA CTTAAGTTCT TTCTATTTGT
  CTTTATCGAT GCATGTGTGG AGCGGTGCTT AGCAAAGGAT TGCCATTTAG ATAAGGCGAT
  GAAGTTGTGG GGCACCATTG CTGTATGACC TTGGTCACCT CCACCTTCCG TGTTCGTACT
  GTGAAAAGAG GGGCAAACTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60313005	NES15818202	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47606754					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60313005	NES15818202	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:46383028 () rs orientation: forward

Symbol	Name	Function Class
Actr1a	ARP1 actin-related protein 1A, centractin alpha	within coordinates
Cpgi11001	CpG island 11001	238 bp proximal
Gm59146	predicted gene, 59146	504 bp upstream
Rr405999	regulatory region 405999	450 bp upstream
Rr406000	regulatory region 406000	1094 bp upstream
Rr548727	regulatory region 548727	14 bp proximal
Rr548728	regulatory region 548728	515 bp proximal
Rr548729	regulatory region 548729	1139 bp proximal
Rr548730	regulatory region 548730	1817 bp proximal
Tssr156751	transcription start site region 156751	764 bp upstream
Tssr156752	transcription start site region 156752	785 bp upstream
Tssr159650	transcription start site region 159650	1133 bp downstream