rs47607912 SNP Detail

Summary

• ID
  rs47607912
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:18091856 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTGCCCACAG TTTGTGGTGT CCCCCCATGT CAATCATTAA
  TTAAGAAAAT TATAGACCTA CCTACAGGTA AATCATTCAT TTTACAAACC GGAAGATGAA
  M
  GCTCAGAGAG ATGAAGTCCT GAGTTCCAGG AGTCTGTTAC TTCCCGCTAC CCTCAGCTCT
  TCTTGACTTT TTCATTACAT ACTCTAGAGA TACATATTT                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss145227494	ENSMUSSNP4685278	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss325312334	CHEV_17_18008558	CHEVERUD	SCREENING_POP	f	SNP			C	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs47607912					SNP	C	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:18091856 () rs orientation: forward

Symbol	Name	Function Class
Gm36907	predicted gene, 36907	1073 bp downstream
Rr340653	regulatory region 340653	within coordinates
Tssr5021	transcription start site region 5021	444 bp downstream
Tssr5022	transcription start site region 5022	421 bp downstream
Tssr5023	transcription start site region 5023	100 bp downstream
Tssr142818	transcription start site region 142818	369 bp upstream