rs47608254 SNP Detail

Summary

• ID
  rs47608254
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:61903728 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGGTTGGA GTTTGGGGCA
  AGAATTCAAA GGTGAGGGTA CAGGCTGGAG GGTTTCCCAG GTAGAGGGCA GGTTCTGTGC
  CTGGTTTATA GGCAAAGAAG CTAAAGTTCC AGAACTGGCC AGGGCTCCCC TAAGGACGAA
  AAGAGCTGGA ATGGAGAACC CAAAGGTCTC TTTACTTCCT AAGCTTTTCT TTGGATGGTA
  S
  TCATCTGATG TGTTTATGCA GCATTGACTC TGGGGTCACA GCCAGACCTT TAAGTCAGAA
  CCTCAGAGGA CAGAAGCAAG TTCAGAAAGA GGAGGCTCCA GCCAAGGCTA ATGTCCAGCA
  ATGGCCACTG CAGACCCAAG CTCCAGCAAT GTCCCTGATG CTCACCCTAG CTAATATCCC
  AGCCCTGGCC ACTAAAGGGT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss61280103	NES16886482	PERLEGEN	MM_PANEL2	f	SNP	C	C	G	C	C	G	C	C	G
SNP Consensus Information
SNP					Consensus Type	A/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs47608254					SNP	C	C	G	C	C	G	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61280103	NES16886482	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:61903728 () rs orientation: forward

Symbol	Name	Function Class
D10Mit149	DNA segment, Chr 10, Massachusetts Institute of Technology 149	679 bp distal
Tssr93687	transcription start site region 93687	1310 bp downstream