rs47608730 SNP Detail

Summary

• ID
  rs47608730
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135639022 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    gggataTGG CTGCCTCAGG GAATAGCTTT
  TCTGAGCTGA AGATGAGTTC GCTCAGTCTC GGGTTAGGGT CATCCTGCTG AGGTACCTCC
  TCCTTCCCTG CTCATGGGTG ACTCACAGAT TTCCGTTCCT GCTGCTGAGT ACAGACAGAC
  W
  CTGCCCCAGC TCTGCTTTGG CACACGTGGT CCCGTGTTTT CTTCTCCAGC CTCTGAGAGG
  GCTCTTCCTG CGAGCATGCA GGGTCACACC CTTAACTTTG CAAGCAGTGC CTCTGGAGAT
  CTGATGTGAA CTCCAGACAG CATCTCATTC                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145543577	ENSMUSSNP6869073	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T	A
ss319992571	CHEV_1_137607861	CHEVERUD	SCREENING_POP	f	SNP				A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47608730					SNP	A	T	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135639022 () rs orientation: forward

Symbol	Name	Function Class
Gm57161	predicted gene, 57161	146 bp downstream
Rr419242	regulatory region 419242	within coordinates
Tssr8966	transcription start site region 8966	88 bp upstream