rs47608960 SNP Detail

Summary

• ID
  rs47608960
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:28535678 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTAAT GGTCTTGACT ATGTCTGGTG
  Y
  AATTTTCTTG ACATTTCCTT GTCTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss131877131	ENSMUSSNP1180700	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
ss323608762	CHEV_11_28485678	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47608960					SNP	T	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:28535678 () rs orientation: forward

Symbol	Name	Function Class
Ccdc85a	coiled-coil domain containing 85A	1354 bp upstream
Cpgi2667	CpG island 2667	1243 bp distal
Rr233134	regulatory region 233134	1078 bp distal
Rr246448	regulatory region 246448	1077 bp distal
Rr385862	regulatory region 385862	1903 bp downstream
Tssr107205	transcription start site region 107205	1573 bp upstream
Tssr107206	transcription start site region 107206	1449 bp upstream
Tssr107207	transcription start site region 107207	1369 bp upstream