rs47610394 SNP Detail

Summary

• ID
  rs47610394
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:60692285 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAATTCACA GTACAAAATA
  GTTCTATGTC TTATTCCTAA AGAGAGACAA AAATTATTAA TATACTTTTT TCCCCCTAAA
  GTGCCAGATG TAGCCATTGC CAGAACATTA AAGTAAAAAA ATGTTTTCCC CACAACACTG
  CAGTCTTAAA AAGCAAGAGA TGACACGACA CTGTATCTTA GAGCCCTAAA TTGATGTTCT
  Y
  TACTTTAGAG CAATGGTTCT CGACCGAATC CTATGACCCT TAAATATGGT TACTTTCTCA
  GGTTGTAGTG ACCCTCAACC ACAGAATTAT TCTGTTGTTA CTTCATAACT ATAATTTTGC
  TACTGTTATG AACCGTAATG CAAATACCTA GCATGCAACA TCCAAAAGGA TCAGGACCCA
  CAGGTTGAGG ACCACTGCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63528655	NES17014306	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47610394					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63528655	NES17014306	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:60692285 () rs orientation: forward

Symbol	Name	Function Class
Lratd2	LRAT domain containing 1	within coordinates
Rr502991	regulatory region 502991	1362 bp proximal
Rr502992	regulatory region 502992	1846 bp proximal
Tssr134471	transcription start site region 134471	716 bp upstream
Tssr134472	transcription start site region 134472	579 bp upstream
Tssr134473	transcription start site region 134473	257 bp upstream
Tssr134474	transcription start site region 134474	1769 bp downstream