rs47610530 SNP Detail

Summary

• ID
  rs47610530
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:146790373 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACACACTA CCACACCATA
  CACACTCTCA AACACACACA CACAAACACA GAGAGGGAGA GACACAGAGA GAGAGAGACA
  GAGAGAGAGA CGAGAGAGGA GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA
  GAGAGAAACA GTAAGCGAGC AAGTGTGGGA GACCAAGCAA AAACATTACT TTTCAAGGCA
  Y
  CTAGGGAACA CAAGGTCTAA TTGGAGAATC AATAACTGAA ACCCCATTTT AAATATTCTG
  CTCTATTAAT TCTTCAGGTT AATAAAAGCT GCCTGCGCGG TGATATTTTG GGGATATAGA
  TATTCAGAGT TGGATTACTT TTGACAAGAG CGTAAGGAAT CTATTCAAAG CTGATTTTCC
  CCCCTTTTGT TCACCGAGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61096459	NES16601015	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47610530					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61096459	NES16601015	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146790373 () rs orientation: forward

Symbol	Name	Function Class
Gm29771	predicted gene, 29771	532 bp upstream
Rr587119	regulatory region 587119	1701 bp distal
Rr587120	regulatory region 587120	830 bp distal
Rr587121	regulatory region 587121	391 bp proximal