rs47610590 SNP Detail

Summary

• ID
  rs47610590
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:52475529 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGAGCTTC CTTATTTACT
  TATACAAGAA GTTGTTGTAC TGTATGAATG AAAGACGGTG CAATTCAATC GTGTGGCTTC
  TGAGAAGTTT AAATGGTATG GAATGTAAAT TTAGTAAAGG AATGATTAAT TAGACAAAAC
  ACTTGAGGTG TGGCTTCACG TTGCTGGCAC TGCTACATTA ATTCTTCGTG TTTTCTTCTC
  R
  TAACAACAAC ATTGGCCTTA TAATGAGGTG GTATAGATGT AACTTACACT TCCTTTTTTA
  AATGGGGAAG TGAGAGGGGC ACAAAAGTTT ATTAGACCGT GCATGTATGG TGTGCCGTGC
  CTTTATTTTA GGAAAACTTT CAGACACCCT CAAAGTTGAA AAACTCCACG AAGATACCTG
  TGAACAGACC TGCAGAGCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60408993	NES15911299	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47610590					SNP	A	A	A	A	A	A	G	A	A	A	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60408993	NES15911299	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52475529 () rs orientation: forward

Symbol	Name	Function Class
D3Mit364	DNA Segment, Chr 3, Massachusetts Institute of Technology-364	1749 bp distal
Rr576544	regulatory region 576544	188 bp distal
Rr576545	regulatory region 576545	543 bp proximal