rs47612455 SNP Detail

Summary

• ID
  rs47612455
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:82328412 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTTCATGAA CAAAAACTCA
  ATATCAATTT AGGTAGAGTT CCCACACAGA AGAATCTTGT AGTGTAATCA TTAGTCATTT
  AAACAGGTAT ACACAGGATT TGGAAAAAGG AAACACTCTT TTATTTAGGT GCTTACCATT
  GCAAATGATG AAGAATCCCA GAAGTGAATA CAGAATAATC AACTTCATAT TTAAAATTTA
  K
  GATCTAGATG ACGTGTCGGT AGTCTGCAGA TCAACCTCTC CAAAGAACAT CTAGCTTGCT
  CATTTATACT CTCTCAGAAC TGTTCAGCCT CTAAGTGATA TGGTGAGCTT GGTGATGACA
  GCACATGTAA ACATTGTCAC ATGTCAAAGA CAGAACAGTG GCTATCACTT AATGTTCATT
  TTCTGTAGTA TCCTCTAAGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	PWD/PhJ	WSB/EiJ
ss52395351	NES15271198	PERLEGEN	MM_PANEL2	f	SNP	G	T	T
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	PWD/PhJ	WSB/EiJ
rs47612455					SNP	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52395351	NES15271198	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:82328412 () rs orientation: forward

Symbol	Name	Function Class
Gm1553	predicted gene 1553	within coordinates
Tssr98669	transcription start site region 98669	30 bp upstream
Tssr98670	transcription start site region 98670	34 bp downstream
Tssr98671	transcription start site region 98671	64 bp downstream