rs47613000 SNP Detail

Summary

• ID
  rs47613000
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:32305148 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCACCTCTC AGGAGCTGGG
  CTGCGGTGGG AGGGTGAGAG AAGCAGGCAG GGGAGATGCT GTAATTGGTC TCCAGAAGTT
  CCAGAAGCTC TGCTGTGTAC CTGGAGAGAC ACGGGTCTGC TCAGAAGCAG GCAGCGGGGG
  AAGGGCTGTG GCAGACTACA CAGTAAGCGC TTAGTCCATC TCAGAGACTC CTGAATGCAA
  R
  GAGATAGTCC ACTGTTTCTC AAGGCCCTGG AGAACTGGCT TAGGCTGGAG TATAAAACAG
  TTAGCCAGGG GCAGTTCCAT CAGGACAGTA GCTCAGTTGG CCAGGGAGGA CGAGCAAGGG
  AAAGAGAAGA CTCTTAACAG GCACGGTAAC GCAGGCTTGT AAGCCCAGCA CTGGAGAGGG
  AGGCTGAGGC AGGAGGATCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63736633	NES17074311	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47613000					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63736633	NES17074311	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:32305148 () rs orientation: forward

Symbol	Name	Function Class
Gm59898	predicted gene, 59898	1729 bp upstream
Rr514710	regulatory region 514710	777 bp distal
Rr514711	regulatory region 514711	802 bp proximal
Rr514712	regulatory region 514712	1539 bp proximal
Rr514713	regulatory region 514713	1740 bp proximal
Slc51a	solute carrier family 51, alpha subunit	within coordinates
Tssr4846	transcription start site region 4846	1266 bp downstream
Tssr4847	transcription start site region 4847	1285 bp downstream
Tssr137989	transcription start site region 137989	1763 bp upstream
Tssr140806	transcription start site region 140806	155 bp upstream
Tssr140807	transcription start site region 140807	822 bp downstream
Tssr140808	transcription start site region 140808	838 bp downstream
Tssr140809	transcription start site region 140809	865 bp downstream
Tssr140810	transcription start site region 140810	895 bp downstream
Tssr140811	transcription start site region 140811	1313 bp downstream
Tssr140812	transcription start site region 140812	1337 bp downstream
Tssr140813	transcription start site region 140813	1479 bp downstream
Tssr140814	transcription start site region 140814	1543 bp downstream
Tssr140815	transcription start site region 140815	1567 bp downstream