rs47613606 SNP Detail

Summary

• ID
  rs47613606
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:156268124 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CCAGGCATA GAATGCAGTA CAGTCCCTAC
  AGGACACAAC GTCATCCCAG AGCCAGACAA CGCGAGGCCC CATCAATAAT CCACTAAGAT
  GACAGTTACA TACTTGATTT CTCCTTGGCT GCATTTAGTA CTCGTGGGAT ATTCTCTCTG
  R
  CAAATGAGTG AGCCTTCATT ATCAAACGAA TCTGTCAAAG CAGAGGGAAC ATGAATTTCC
  TACCTCTGTC TCCTATAAGT AACTCCAGAG CTACACAGGC TAATAGCATT CACACAAAAG
  AACTTAAATT TACATCTACC AACTCAAGTT                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60329451	NES15835616	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A		A	A	A	A		G
ss320072195	CHEV_1_158370685	CHEVERUD	SCREENING_POP	f	SNP											G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs47613606					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60329451	NES15835616	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156268124 () rs orientation: forward

Symbol	Name	Function Class
Soat1	sterol O-acyltransferase 1	within coordinates
Tssr9565	transcription start site region 9565	840 bp downstream
Tssr14442	transcription start site region 14442	1235 bp upstream
Tssr14443	transcription start site region 14443	828 bp downstream
Tssr14444	transcription start site region 14444	846 bp downstream