rs47615517 SNP Detail

Summary

• ID
  rs47615517
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127203145 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGACTGGAGA CCCACTCCTG
  AGTCAAGATG CCAATGCTAT GGGAGTGACC TCATCTGCAA AAGCCACCGA CACTGCCCAA
  ACCACCTTGC AACACATCAT CCATCTCGTG CATGCATGCG TGTGCCTGTG CGTGAGTGTG
  TGCGTGTGTG TGTGTGCATA CTTTAAGCAA GTCATCACAG TATGGTTCAT GGAAGGCCTC
  R
  GGGACATAAC CATTAGACTT GGTGCAGCAT GAAGTTCTAA TCATGAGAGA GCTCACCTAT
  AGTCCAACCA AAATACACTT ACAGACCCAC ACAGCAAATG GGCAGGGGGA AATAGAGAAA
  GCCTATTTGC ACTGAATGCA TTTAGCCACC AACCATTTAT TTAATCACCC ATAAATCACC
  TGACAACAAG GAGCCTATCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	LG/J	SM/J
ss135862671	ENSMUSSNP2863392	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss320953864	CHEV_3_127112414	CHEVERUD	SCREENING_POP	f	SNP		A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	LG/J	SM/J
rs47615517					SNP	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127203145 () rs orientation: forward

Symbol	Name	Function Class
Ank2	ankyrin 2, brain	within coordinates
Cpgi13790	CpG island 13790	581 bp distal
Gm52631	predicted gene, 52631	within coordinates
Rr584773	regulatory region 584773	540 bp distal
Rr584774	regulatory region 584774	within coordinates
Tssr35571	transcription start site region 35571	609 bp upstream
Tssr35572	transcription start site region 35572	515 bp upstream
Tssr35573	transcription start site region 35573	488 bp upstream
Tssr35574	transcription start site region 35574	453 bp upstream
Tssr35575	transcription start site region 35575	432 bp upstream