rs47616984 SNP Detail

Summary

• ID
  rs47616984
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:134068896 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAGA TCAGGGAAAA CAAGCTTGGG
  A
  GAACGTTTAG GGGCTTTACC GTTCA                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321346943	CHEV_4_133897500	CHEVERUD	SCREENING_POP	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs47616984					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134068896 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15035	CpG island 15035	1337 bp proximal
Rr601645	regulatory region 601645	1106 bp proximal
Slc30a2	solute carrier family 30 (zinc transporter), member 2	1596 bp upstream
Tssr39548	transcription start site region 39548	1558 bp upstream
Tssr39549	transcription start site region 39549	1613 bp upstream
Tssr39550	transcription start site region 39550	1908 bp upstream
Tssr39551	transcription start site region 39551	1938 bp upstream