rs47619394 SNP Detail

Summary

• ID
  rs47619394
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:121268483 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTAT ACTGTCGTTT TTTTCCCCTC
  R
  TGGGATGGAG AATCAGGGTC TCTAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss147386128	ENSMUSSNP6474005	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss320483163	CHEV_2_121263738	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs47619394					SNP	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121268483 () rs orientation: forward

Symbol	Name	Function Class
Ell3	elongation factor RNA polymerase II-like 3	1025 bp downstream
Pdia3	protein disulfide isomerase associated 3	within coordinates
Tssr19768	transcription start site region 19768	1638 bp downstream
Tssr19769	transcription start site region 19769	356 bp downstream
Tssr19770	transcription start site region 19770	56 bp downstream