rs47619593 SNP Detail

Summary

• ID
  rs47619593
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:47450917 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTCTCAGGGC AGAGTCTGCC ATCATTGAAA GCAGTACCAG
  CCTCAACTGA AGGCTGAAAA AAATATATAA AACAATCCTT AAGACAGCCT GCAGTGCCCC
  Y
  CAAAGTTGTC AAGATGGTTG GCAGCATACA TAACCCAGAG ATGTACAAAT GGATACCTGT
  CCTTAGAGCA GAGTGGCCAC CTGCTGATCG AAGCCCTCC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss146465877	ENSMUSSNP3582230	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs47619593					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:47450917 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11031	CpG island 11031	921 bp proximal
Rr549061	regulatory region 549061	1534 bp distal
Rr549062	regulatory region 549062	1624 bp distal
Rr549063	regulatory region 549063	545 bp distal
Rr549064	regulatory region 549064	427 bp distal
Rr549065	regulatory region 549065	689 bp proximal
Rr549066	regulatory region 549066	1674 bp proximal
Rr549067	regulatory region 549067	1759 bp proximal
Sh3pxd2a	SH3 and PX domains 2A	within coordinates
Tssr159729	transcription start site region 159729	1855 bp upstream
Tssr159730	transcription start site region 159730	1711 bp upstream
Tssr159731	transcription start site region 159731	1616 bp downstream
Tssr159732	transcription start site region 159732	1637 bp downstream
Tssr159733	transcription start site region 159733	1928 bp downstream