rs47622833 SNP Detail

Summary

• ID
  rs47622833
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:142679414 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAGGTGTTC CCCCCCCCCT
  CAACCCTGCC ATCCTCACCC ACAGCAGCCA GTAATGAAGA GTTATTTCCA ACTAAAAGCC
  CTTGGAGCTG AGCCAGACAG CTCCAGGATG CTGAGCCGGC CTCCAGCAGT GGCCCGCGGC
  CCTAGCCGCC CTTAAGAGTC CTTATCCACC TCACTAGGTT GAGTCTCAGT CTTAGGAAGA
  R
  GCTGATGTGA GGTTAGGGGA CACAACTGTC TGATTGCCAG GCCTAGTAGT CTTGGGGGGG
  GGGTGGGCTC AAGGGATCTC TGGACTAATA GATTTGGGGG TGGGGAAGGG TGTACATCTG
  CCCTGCTGCA GCGTGAGTTG GACAAGCTCC TCCAAGATGC TGGGCTGTCC TCTGTGATAA
  CTCCCTCCCA ACAGCAAAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60850508	NES16004459	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47622833					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60850508	NES16004459	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:142679414 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16953	CpG island 16953	1122 bp distal
Gm40352	predicted gene, 40352	455 bp upstream
Rr127813	regulatory region 127813	within coordinates
Slc29a4	solute carrier family 29 (nucleoside transporters), member 4	within coordinates
Tssr49584	transcription start site region 49584	1178 bp downstream
Tssr49585	transcription start site region 49585	1157 bp downstream
Tssr49586	transcription start site region 49586	439 bp upstream