rs47623660 SNP Detail

Summary

• ID
  rs47623660
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:170418348 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGGA AGGTAAACAA CTCCAAGAAG
  Y
  TTCAGGAAGT CCCTGAAACT GGCCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	MSM/Ms	SM/J
ss146138594	ENSMUSSNP2852396	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		T
ss320111485	CHEV_1_172520910	CHEVERUD	SCREENING_POP	f	SNP			C		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	MSM/Ms	SM/J
rs47623660					SNP	C	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:170418348 () rs orientation: forward

Symbol	Name	Function Class
Cpgi994	CpG island 994	506 bp distal
Nos1ap	nitric oxide synthase 1 (neuronal) adaptor protein	977 bp upstream
Rr423086	regulatory region 423086	929 bp distal
Rr423087	regulatory region 423087	428 bp distal
Tssr14920	transcription start site region 14920	1010 bp upstream
Tssr14921	transcription start site region 14921	925 bp upstream