rs47626359 SNP Detail

Summary

• ID
  rs47626359
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:18911203 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAGAAGACTT TCTGTACACT GCACTGTCTT CAGCTTTGCC
  TCTGCCCCCT CTCCCCACCC CAGGTAGAAT CCTCTTCTCC CCTAGACAAA TGTGTATGGC
  R
  CCAGTAGGGC CATTTTAGTA CGAGGGGAGC TGGGCTGGAG GAGTGGAGAG GTAAAGAGAC
  GCGGAGAGTG GACACTGGTC TCTAGGCCAG GAAAACGTC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60972637	NES16155331	PERLEGEN	MM_PANEL2	f	SNP	A		A	G	A	A	A	A	A	G	A		A	A	A	A		G
ss148469591	ENSMUSSNP781095	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A						A
ss322116607	CHEV_7_19762627	CHEVERUD	SCREENING_POP	f	SNP												A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs47626359					SNP	A	A	A	G	A	A	A	A	A	G	A	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60972637	NES16155331	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:18911203 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18450	CpG island 18450	468 bp distal
Cpgi18451	CpG island 18451	847 bp proximal
Cpgi18452	CpG island 18452	1679 bp proximal
Eml2	echinoderm microtubule associated protein like 2	within coordinates
Gm71808	predicted gene, 71808	667 bp upstream
Rr155272	regulatory region 155272	998 bp proximal
Rr167138	regulatory region 167138	within coordinates
Tssr64790	transcription start site region 64790	838 bp downstream
Tssr64791	transcription start site region 64791	804 bp downstream
Tssr64792	transcription start site region 64792	766 bp downstream
Tssr64793	transcription start site region 64793	741 bp downstream
Tssr64794	transcription start site region 64794	585 bp downstream
Tssr64795	transcription start site region 64795	925 bp upstream
Tssr64796	transcription start site region 64796	1703 bp upstream