rs47627116 SNP Detail

Summary

• ID
  rs47627116
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:172188494 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGACAGCA GCATATCTCA
  AGTAGGTCTC AAAAAAAAAA AAAAAAAAAA AAAAAAGCAG GAGTTCAGAA GTAGTAGATC
  GGAAGCGTCG AGGTCTGGGG GAGTCTGAAA GAAAGATCAC TGCCATGAAT CGGGCAGTTC
  TGAGTACTGT CTGCTCCCGT GGCTTTTCAG TTAGGGATTG GTCGCTTTCC TTGAGTGCCG
  M
  GCACAATGAT GGAAGGACTT CCTTCCCCTC TCTCCTGCCT GACAGACAGG ACACTGGCCT
  CAGCTCTGCT CCTGAGCACA AGTCAGGATA CTCACAGCGT ACCGTGCTTC AGGGCACCGC
  ATAGCTTCCC TCTCCTCCAG AAAGTCTTCC CTGACTACCA GTAGTGTGCC CCCCCGCCCT
  ATACTGTCTC TTCTCTAGCG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	MSM/Ms	SM/J
ss148314006	ENSMUSSNP713038	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		A
ss320618212	CHEV_2_172172074	CHEVERUD	SCREENING_POP	f	SNP			C		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	MSM/Ms	SM/J
rs47627116					SNP	C	C	C	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:172188494 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12819	CpG island 12819	191 bp distal
Fam210b	family with sequence similarity 210, member B	within coordinates
Rr56171	regulatory region 56171	within coordinates
Tssr21944	transcription start site region 21944	984 bp downstream
Tssr21945	transcription start site region 21945	948 bp downstream
Tssr21946	transcription start site region 21946	927 bp downstream
Tssr27939	transcription start site region 27939	891 bp upstream