rs47627176 SNP Detail

Summary

• ID
  rs47627176
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:24826246 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCCCCGCA GTGCCCAGCC
  TTACAGTGAG ATAATGCCCT TCAGGGACCC ACTTGTGGCT ACTGAAAGCA TCAGGGGCTT
  AACTCAGTCC ACCCTTAAAC GAGCCTACTG AACCTTAGCC CAGGACGGAC GGCTTCTGTG
  CACCTGCTAG AGACTGCACC ATCCCCCACT TTCAGCCTCC TCTAACTAAA ACCTTAGGAT
  K
  CTGAGCCTGA GCCTGCTCCA GAACAAGCCT GATGGATCCA TCTGTTTGCC CATTTGCTTT
  GGGAATCTTC ACTACAAAAG TCCCCTACAG ACTTAGGATG AGGTCTCCTT GTCACCTGAG
  GTGCTGCAGC GAGAAAGGAA ACGGGAGTCC CAACTTTTCC GAGACTCCCA GTATCGATGT
  GGGCATGCCC TCACTGTGCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148097844	ENSMUSSNP5310397	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47627176					SNP	G	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:24826246 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm71653	predicted gene, 71653			689 bp upstream
Rr608374	regulatory region 608374			782 bp distal
Rr608375	regulatory region 608375			1645 bp proximal
Smarcd3	SWI/SNF related BAF chromatin remodeling complex subunit D3			Intron
				Noncoding-Transcript-Variant
Tssr50355	transcription start site region 50355			1398 bp downstream
Tssr50356	transcription start site region 50356			1411 bp downstream