rs47627276 SNP Detail

Summary

• ID
  rs47627276
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:82328028 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCAAA TCTACCAAAA GACATTATCA
  K
  TAGACGTGTA TTGGCTGCAA AATCA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
ss52395354	NES15271196	PERLEGEN	MM_PANEL2	f	SNP				T	T		G
ss147186356	ENSMUSSNP1571186	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss323364268	CHEV_10_81954939	CHEVERUD	SCREENING_POP	f	SNP			T			T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
rs47627276					SNP	T	T	T	T	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52395354	NES15271196	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:82328028 () rs orientation: forward

Symbol	Name	Function Class
Gm1553	predicted gene 1553	within coordinates
Tssr98669	transcription start site region 98669	346 bp downstream
Tssr98670	transcription start site region 98670	418 bp downstream
Tssr98671	transcription start site region 98671	448 bp downstream