rs47627709 SNP Detail

Summary

• ID
  rs47627709
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:45319244 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAGATAAG AGAAGGAACA
  AATAAGATTG AGTGACTAAA GACCCTTGAG AGTTGAAGAA AAAGCAGCAG AGAGGCCAGC
  ACATTTCTGG CTCAGGTGTT CAGGAAGAAC ATGGCTAAAC TACCCAGAAA GCCCAACCTG
  AAAACCTACA GAAACAAGAT TACTCTTCTG TCAGCTCCAG CTCCAAGGAT TTAGAGCCAT
  S
  ATGAACAGAT AGCCAATAGT GCCCATGGCC CTTAGACTAG GGCCATTTTC CTCATGGGGT
  GGATTCAGAC ATGACAGGTA AGGAGGGGGA TAGCAGATGT AACTCTTCAA CCCGGTAGAA
  AAGAACCAAG GCTGCAAACA TGACATACAG CAATACTTCT GGAGCCGCAG CGCCTGAGAA
  ACTCTTATAA ACTGTCTTGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss146251698	ENSMUSSNP172796	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47627709					SNP	G	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:45319244 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14233	CpG island 14233	788 bp proximal
Exosc3	exosome component 3	within coordinates
Gm68922	predicted gene, 68922	1115 bp upstream
Rr100958	regulatory region 100958	156 bp proximal
Tssr37060	transcription start site region 37060	1129 bp upstream
Tssr37061	transcription start site region 37061	1141 bp upstream
Tssr37062	transcription start site region 37062	1174 bp upstream
Tssr41531	transcription start site region 41531	1026 bp downstream
Tssr41532	transcription start site region 41532	1132 bp downstream
Tssr41533	transcription start site region 41533	1218 bp downstream
Tssr41534	transcription start site region 41534	1336 bp downstream