rs47627829 SNP Detail

Summary

• ID
  rs47627829
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:38353129 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGAGCCCA GTCACCAGAA
  TCCATATAAA AATAAGGAGA CAATAAGCCC CGCAGATTTG TCCCTGACAT CAGCATACCT
  GTCATCTATT CCTTTCCCAG AGCTCACTAG GTCATCTAGA TGGAGGAGGG GTCTGACATT
  CTCTGCCTCC GGAGCACTTG GATTACAGAG GTGAACCACT ACACTATGTC TTTATGTGGG
  Y
  ACTGGAGATC CAAACTTGGG TCCTTATTCT GTGGGCCAAG GGCTTTAACA ACTGAGCCAT
  TTCCCCAGCC CCAAACATTT GTTTTGACGA ATATTCATAA ATCTAGTGAT CAAAATGAAA
  AAGCTAAGAA CACTTAAATT GATTAAAAGT TACTGTTATC TGTAGTGGAA ACATGGAAAT
  TTCTTTCTTG TTTGGTTGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	MSM/Ms
ss133127190	ENSMUSSNP4582948	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	MSM/Ms
rs47627829					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:38353129 () rs orientation: forward

Symbol	Name	Function Class
D0Nds34	DNA segment, Nuffield Department of Surgery 34	927 bp proximal
Rpl30-ps1	ribosomal protein L30, pseudogene 1	613 bp upstream
Rr144024	regulatory region 144024	1482 bp distal
Rr146156	regulatory region 146156	471 bp proximal
Tssr55644	transcription start site region 55644	540 bp upstream