rs47628443 SNP Detail

Summary

• ID
  rs47628443
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:66133720 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATTTATAA AAGAGATCTA
  TGTGATCCCA ATTAGGGCTG AGTGTAATGG GCTGTGTTTA AACTAAATCC TAAGTGTCTC
  TGGTTTTGTT TTTTTTTTTT GTTGTTGTTG TTTCAAATGA TGGGTCGCAA GAATAAATGA
  AAAGGGAGAA AAAAGAACAA GAGCATTAAC AGAACAGTAA GATTAAAGAT TACAGCAACC
  M
  TGAAAGCAAG GGATTCCCAT GCCATACATA CCAGTGAGGA GTCTAACCAT ACACCCACAC
  TCGGGTACAT TAGACACAAA CCCCTATGCT CATCTTTAGC CCAGACTGAA GTTAAATTCA
  GCCAAGAATG ACCTTGAACA CTCTTGCCTC CACTTCCCAG TGAAATCAGC TGTGATTACA
  AATGTGAACC ACTACACCCA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63157256	NES17452301	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47628443					SNP	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63157256	NES17452301	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:66133720 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10156	CpG island 10156	1418 bp proximal
Lman1	lectin, mannose-binding, 1	within coordinates
Rr349772	regulatory region 349772	1720 bp distal
Rr353056	regulatory region 353056	80 bp proximal
Rr405704	regulatory region 405704	1898 bp upstream
Tssr153727	transcription start site region 153727	1963 bp downstream