rs47628702 SNP Detail

Summary

• ID
  rs47628702
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:156938181 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGTCCTCCAC AGTCCATCTC CACCATATCA TTGAAGCGGC
  CTAGGCCCCG TGTGCTGCCC TCCCTGTGCT AGGGTTTTTA TGTTATCTGG CTTTTTATGT
  Y
  GGTGCTGGGG GCAGGTCCTC GTGCCCGAGT AACAGACATT GTACCTACAG AGCTGTCTCC
  AGAGCTCGTT CCCTCTCTCT TCAGTGGCCA GTTTGGGCT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss148091806	ENSMUSSNP6773490	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs47628702					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156938181 () rs orientation: forward

Symbol	Name	Function Class
Rr568431	regulatory region 568431	584 bp distal
Rr568432	regulatory region 568432	1027 bp distal
Samhd1	SAM domain and HD domain, 1	1273 bp downstream
Tldc2	TBC/LysM associated domain containing 2	within coordinates