rs47629602 SNP Detail

Summary

• ID
  rs47629602
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:91600506 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGTCTCTG TCTCTGTCTC
  TCTCTCTGTC TTGTTTTTTT GGAGACAGAG TTTCTCTGTA TAGCCCTGGT TATCCTGGAA
  CTCACTCTGT AGACCAGTCT AGCCTTGAAC TCAGAAATCT GCCTGCCTAT GCCTCCCAAG
  TGCTGAGATT AAAGGCATGG GCCACCCCTG CCTGGCATTT CTCCTCTTAG TATCTTATAG
  Y
  GAGCCATAGC GTATCCTTCA AAGTAGTAAA AATGAGAAGT AATGAGGAGC CTGCCTAAGG
  ACGAGGCTCA AAGGTAGCAG ACTGACTCAG GATTATTGCC CAATCAGAGG ACTTAACTTC
  AGGAGCTCAA TACACCCCAG CCCACCATAT TGAAGCAATA GCTTATGCAT TCTGCTCTTA
  TGTGCTTAAT CTAACCTGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52679077	NES15524194	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47629602					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52679077	NES15524194	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:91600506 () rs orientation: forward

Symbol	Name	Function Class
Rr277507	regulatory region 277507	within coordinates
Rr277508	regulatory region 277508	495 bp proximal