rs47631688 SNP Detail

Summary

• ID
  rs47631688
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:26752449 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGCACTTCAG GGAATGGGAA ACAAAGCTGA GAAGCTTCAA
  GTGATCACAG GGAAAGGAGA GTGAGGCCCC TCGCCAGGAG TCAGCATCTG TAGGATTGAA
  K
  CGACTTCCAG ATACAGTGCA GGATTCGATG GCATGGGAGT TACAGTCTAT GGGGCTCAAC
  TGATGCCGCA ACCCACCTAG CAGCCATAGG GTCTGCAAAT                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60554837	NES16569785	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47631688					SNP	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60554837	NES16569785	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:26752449 () rs orientation: forward

Symbol	Name	Function Class
Gm34606	predicted gene, 34606	within coordinates
Gm64855	predicted gene, 64855	1858 bp upstream
Tssr5048	transcription start site region 5048	1856 bp upstream
Tssr5049	transcription start site region 5049	1923 bp downstream
Tssr143239	transcription start site region 143239	1636 bp downstream
Tssr143240	transcription start site region 143240	589 bp downstream
Tssr143241	transcription start site region 143241	575 bp downstream
Tssr143242	transcription start site region 143242	545 bp downstream
Tssr143243	transcription start site region 143243	520 bp downstream
Tssr143244	transcription start site region 143244	503 bp downstream
Tssr143245	transcription start site region 143245	650 bp upstream
Tssr146959	transcription start site region 146959	1778 bp upstream
Tssr146960	transcription start site region 146960	858 bp upstream
Tssr146961	transcription start site region 146961	828 bp upstream
Tssr146962	transcription start site region 146962	799 bp upstream
Tssr146963	transcription start site region 146963	752 bp upstream